Bioinformatics

PROJECTS HOME PAGE

 

DATA DOWNLOAD

The data are freely available in various formats. Please click on the format of your choice to download to a local file.
(For temporary access, please use "guest" account with password "guest")

• Gene

IDD_genes
The ID gene database is designed to provide integrated information on known and candidate ID genes, and their protein features, protein interactions and associated pathways.
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• GO

gene_GO_annotation
Human genes with GO term annotation. Because each gene product can be annotated using multiple GO terms, a single gene can show multiple times in the table.
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• MicroArray

hsa21_affy_probesets

• Pathway

BioCarta_pathway
BioCarta provides immediate access to existing life science research and integrates new data as it emerges. Broadly, this information falls into four categories ? gene function, proteomic pathways, ePosters, and research reagents.
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BioCarta_pathway_detail
BioCarta provides immediate access to existing life science research and integrates new data as it emerges. This dataset provides detail information on BioCarta pathway components.
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KEGG_pathway
KEGG PATHWAY is a collection of manually drawn pathway maps representing knowledge on the molecular interaction and reaction networks for Global Map, Metabolism, Genetic Information Processing, Environmental Information Processing, Cellular Processes, Organismal Systems, and Human Diseases.
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KEGG_pathway_detail
KEGG PATHWAY is a collection of manually drawn pathway maps representing knowledge on the molecular interaction and reaction networks. This dataset provides detail information on KEGG pathways' components.
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Reactome
Reactome is a free, open-source, curated and peer reviewed pathway database, providing intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic research, genome analysis, modeling, systems biology and education.
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Reactome_detail
Reactome is a free, open-source, curated and peer reviewed pathway database. This dataset provides detail information on Reactome pathway components.
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• PPI

BioGrid
BioGRID is an online interaction repository with data compiled through comprehensive curation efforts. All interaction data are freely provided and downloadable in a wide variety of standardized formats.
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HPRD-PPI
HPRD Protein-Protein Interaction database has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data. Please cite the following reference for this database: Prasad, T. S. K. et al. (2009) Human Protein Reference Database - 2009 Update. Nucleic Acids Research. 37, D767-72
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Int-Act
IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.
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